| ASSIGNMENTS | RELATED FILES |
|---|---|
| Problem Set 1 (PDF) | The .fna file below contains the nucleic acid sequence of E. coli in the FASTA format. A sequence in FASTA format begins with a single-line description, followed by lines of sequence data. The description line is distinguished from the sequence data by a greater-than (">") symbol in the first column. (FNA - 4.5 MB) |
| Problem Set 2 (PDF) | Article by Altschul et al on BLAST |
| Problem Set 3 (PDF) | The .fna file below contains the nucleic acid sequence of E. coli in the FASTA format. A sequence in FASTA format begins with a single-line description, followed by lines of sequence data. The description line is distinguished from the sequence data by a greater-than (">") symbol in the first column. (FNA - 4.5 MB) |
| Problem Set 4 (PDF) | |
| Problem Set 5 (PDF) | 1TEN.PDB (PDB) 2EBN.PDB (PDB) 4HHB_A.PDB (PDB) Miyazawa, Sanzo, and Robert L. Jernigan (MJ). "Residue–Residue Potentials with a Favorable Contact Pair Term and an Unfavorable High Packing Density Term, for Simulation and Threading." JMB. (PDF) MJ Interaction Table (3) (PDF) |
| Problem Set 6 (PDF) | The RNA Puller @ Ohio-State University |
| Problem Set 7 (PDF) | |
| Problem Set 8 (PDF) | purR_sites.txt (TXT) gene_table.txt (TXT) |